![]() Seg = nnUNet_predict_image(input, output, task_id, model=model, folds=folds,įile “/Applications/Slicer.app/Contents/lib/Python/lib/python3.9/site-packages/totalsegmentator/nnunet.py”, line 255, in nnUNet_predict_image Totalsegmentator(args.input, args.output, args.ml, args.nr_thr_resamp, args.nr_thr_saving,įile “/Applications/Slicer.app/Contents/lib/Python/lib/python3.9/site-packages/totalsegmentator/python_api.py”, line 173, in totalsegmentator ![]() Disabling.”)įile “/Applications/Slicer.app/Contents/lib/Python/bin/TotalSegmentator”, line 93, inįile “/Applications/Slicer.app/Contents/lib/Python/bin/TotalSegmentator”, line 86, in main Warnings.warn(“ only affects CUDA ops, but CUDA is not available. Applications/Slicer.app/Contents/lib/Python/lib/python3.9/site-packages/torch/cuda/amp/autocast_mode.py:118: UserWarning: only affects CUDA ops, but CUDA is not available. Warnings.warn(“ is enabled, but CUDA is not available. Applications/Slicer.app/Contents/lib/Python/lib/python3.9/site-packages/torch/cuda/amp/grad_scaler.py:116: UserWarning: is enabled, but CUDA is not available. Writing input file to /private/var/folders/n4/_8hf03v543x_q3b0k017wbfm0000gp/T/Slicer-mosc7cj2/_SlicerTemp_10+25+00.631/total-segmentator-input.niiĬreating segmentations with TotalSegmentator AI… Operating system: macOS Monterey 12.5.1 (Apple M1 chip)Īctual behavior: ERROR when running apply I have tried uninstalling 3D slicer/PyTorch/totalsegmentator numerous times with no luck. When I run totalsegmentator on 3D slicer using the CTA Abdomen (panoramix) sample data it comes with the following error.
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